This is the same title list from the root page to Animaniacs, but with breakdowns in color coding the segment to reflect on the characters involved, which can be compared below this text. There's also add-ins of volume and disc number which separates respective episodes, with the volume/disc representing what's on it with the titles below until the next one is mentioned.
Yakko, Wakko & Dot (at times all or the following: Dr. Scratchensiff, Ralph & Hello Nurse)
Slappy Squirrel / Slappy & Skippy
The Goodfeathers
Mindy & Buttons
Chicken Boo
Pinky & the Brain
Hip Hippos
Rita & Runt
Mr. Skullhead
Katie Ka-Boom
Minerva
Other
Slappy Squirrel / Slappy & Skippy
The Goodfeathers
Mindy & Buttons
Chicken Boo
Pinky & the Brain
Hip Hippos
Rita & Runt
Mr. Skullhead
Katie Ka-Boom
Minerva
Other
SEASON 1
VOLUME 1, DISC 1
001. De-Zanitized / The Monkey Song / Nighty-Night Toon
002. Yakko’s World / Cookies for Einstein / Win Big
003. HMS Yakko / Slappy Goes Walnuts / Yakko’s Universe
004. Hooked on a Ceiling / Goodfeathers: The Beginning
005. Taming of the Screwy
VOLUME 1, DISC 2
006. Temporary Insanity / Operation: Lollipop / What Are We?
007. Piano Rag / When Rita Met Runt
008. The Big Candy Store / Bumbie’s Mom
009. Wally Llama / Where Rodents Dare
010. King Yakko
VOLUME 1, DISC 3
011. No Pain, No Painting / Les Miseranimals
012. Garage Sale of the Century / West Side Pigeons
013. Hello Nice Warners / La Behemoth / Little Old Slappy from Pasadena
014. La La Law / Cat on a Hot Steel Beam
015. Space Probed / Battle for the Planet
VOLUME 1, DISC 4
016. Chalkboard Bungle / Hurray for Slappy / The Great Wakkorotti: The Master and His Music
017. Roller Over, Beethoven / The Cat and the Fiddle
018. Pavlov's Mice / Chicken Boo-Ryshnikov / Nothing But the Tooth
019. Meatballs or Consequences / A Moving Experience
020. Hearts of Twilight / The Boids
VOLUME 1, DISC 5
021. The Flame / Wakko’s America / Davy Omelette / Four Score and Seven Migraines Ago
022. Guardin’ the Garden / Plane Pals
023. Be Careful What You Eat / Up the Crazy River / Ta Da Dump, Ta Da Dump, Ta Da Dump Dump Dump
024. Opportunity Knox / Wings Take Heart
025. Hercule Yakko (w/ Hip Hippos, Pinky & the Brain) / Home on De-Nile / A Midsummer Night’s Dream
VOLUME 2, DISC 1
026. Testimonials / Babblin’ Bijou / Potty Emergency / Sir Yaksalot
027. You Risk Your Life / I Got Yer Can / Jockey For Position
028. Moby or Not Moby / Mesozoic Mindy / The Good, the Boo and the Ugly
029. Draculee, Draculaa / Phranken-Runt
030. Hot, Bothered and Bedeviled / Moon Over Minerva / Skullhead Boneyheads
VOLUME 2, DISC 2
031. O Silly Mio / Puttin’ on the Blitz / The Great Wakkorotti: The Summer Concert
032. Chairman of the Bored / Planets Song / Astro-Buttons
033. Cartoons in Wakko’s Body / Noah’s Lark / The Big Kiss / Hiccup
034. Clown and Out / Bubba Bo Bob Brain
035. In The Garden of Mindy (Brain & Mindy) / No Place Like Homeless (Pesto & Runt) / Katie Ka-Boo (Katie Ka-Boom & Chicken Boo) / Baghdad Cafe (Yakko, Wakko & Slappy)
VOLUME 2, DISC 3
036. Critical Condition / The Three Muska-Warners
037. Dough Dough Boys / Boot Camping / General Boo-Regard
038. Spell-Bound
039. Smitten with Kittens / Alas Poor Skullhead / White Gloves
040. Fair Game / The Slapper / Puppet Rulers
VOLUME 2, DISC 4
041. Buttermilk, It Makes a Body Bitter / Broadcast Nuisance / Raging Bird
042. Animator’s Alley / Can’t Buy a Thrill / Hollywoodchuck
043. Of Nice and Men / What a Dump / Survey Ladies
044. Useless Facts / The Senses / The World Can Wait / Kiki’s Kitten
045. Windsor Hassle / …And Justice for Slappy
VOLUME 2, DISC 5
046. Turkey Jerky / Wild Blue Yonder
047. Video Review / When Mice Ruled the Earth
048. Mobster Mash / Lake Titicaca / Icebreakers
049. A Christmas Plotz / Little Drummer Warners
050. Twas The Day Before Christmas (with all major characters) / Jingle Boo / The Great Wakkorotti: The Holiday Concert / Toy Shop Terror / Yakko's Universe
VOLUME 3, DISC 1
051. The Warners and the Beanstalk / Frontier Slappy
052. Ups and Downs / The Brave Little Trailer / Yes, Always
053. Drive-Insane / Girlfeathers / I’m Cute
054. Brain Meets Brawn / Meet Minerva
055. Gold Rush / A Gift of Gold (Mindy & Buttons cameo) / Dot’s Quiet Time
VOLUME 3, DISC 2
056. Schnitzelbank / The Helpinki Formula / Les Boutons Et Le Ballon (Buttons And The Balloon) / Kung Boo
057. Of Course, You Know This Means Warners / Up a Tree / Wakko’s Gizmo
058. Meet John Brain / Smell Ya Later
059. Ragamuffins / Woodstock Slappy
060. Karaoke-Dokie / The Cranial Crusader / The Chicken Who Loved Me
VOLUME 3, DISC 3
061. Baloney & Kids / Super Buttons / Katie Ka-Boom: The Driving Lesson
062. Scare Happy Slappy / Witch One / MacBeth (w/ Slappy & Hello Nurse)
063. With Three You Get Eggroll / Mermaid Mindy / Katie Ka-Boom: Call Waiting
064. Lookit the Fuzzy Heads (w/ Elmyra, appearances by Mindy & Buttons) / No Face Like Home
065. The Warners 65th Anniversary Special
SEASON 2
VOLUME 3, DISC 4
066. Take My Siblings Please / The Mindy 500 / Morning Malaise
067. Miami Mama-Mia / Pigeon on the Roof
068. We're No Pigeons / Whistle-Stop Mindy / Katie Ka-Boom: The Broken Date
069. I’m Mad / Bad Mood Bobby / Katie Ka-Boom: The Blemish / Fake
SEASON 3
070. Super Strong Warner Siblings / Nutcracker Slappy / Wakko's New Gookie / A Quake, A Quake!
VOLUME 3, DISC 5
071. Variety Speak / Three Tenors and You're Out / Bingo
072. Deduces Wild / Rest in Pieces / U.N. Me
073. A Hard Day’s Warner / Gimme a Break / Please Please Please Get a Life Foundation
074. The Tiger Prince / All the Words in the English Language / The Kid In The Lid / Method To Her Madness
075. The Presidents Song / Don’t Tread on Us / The Flame Returns by Henry Wadsworth Longfellow ?
VOLUME 4, DISC 1
076. Gimme the Works / Button in Ows / Hercules Unwound (Yakko, Wakko & Dot, then Pinky & the Brain)
077. This Pun for Hire / Star Truck / Go Fish / Multiplication Song
078. The Sound of Warners / Yabba Dabba Boo
079. My Mother the Squirrel / The Party / Oh! Say Can You See? / The 12 Days of Christmas Song
080. Dot’s Entertainment / The Girl With the Googily Goop / Gunga Dot
081. Soccer Coach Slappy / Belly Button Blues / Our Final Space Cartoon, We Promise / Valuable Lesson
082. Wakko's 2-Note Song / Panama Canal / Hello Nurse / The Ballad of Magellan / The Return of The Great Wakkorotti / The Big Wrap Party Tonight
SEASON 4
083. One Flew Over the Cuckoo Clock
VOLUME 4, DISC 2
084. Cutie and the Beast / Boo Happens / Noel
085. Jokahontas / Boids on the Hood / Mighty Wakko at the Bat
086. A Very Very Very Very Special Show / Night of the Living Buttons / Soda Jerk
087. From Burbank With Love / Anchors A-Warners / When You’re Traveling from Nantucket
088. Papers for Pappa / Amazing Gladiators / Pinky and the Ralph
089. 10 Short Films About Wakko Warner / No Time for Love / The Boo Network
090. Pitter Patter of Little Feet (with Brain) / Mindy in Wonderland / Ralph’s Wedding
SEASON 5
091. Message in a Bottle / Back in Style / Bones in the Body (with Mr. Skullhead)
VOLUME 4, DISC 3
092. It / Dot – The Macadamia Nut (most characters appear) / Bully for Skippy
093. Cute First (Ask Later) / Acquaintances / Here Comes Attila / Boo Wonder
094. Hooray for North Hollywood: Part 1
095. Hooray for North Hollywood: Part 2
096. The Carpool / The Sunshine Squirrels
097. The Christmas Tree / Punchline (Part 1) / Prom Night / Punchline (Part 2)
098. Magic Time / The Brain’s Apprentice
099. Birds on a Wire / The Scoring Session / The Animaniacs Suite
DIRECT-TO-VIDEO MOVIE
M01. Wakko’s Wish
VOLUME 1, DISC 1
001. De-Zanitized / The Monkey Song / Nighty-Night Toon
002. Yakko’s World / Cookies for Einstein / Win Big
003. HMS Yakko / Slappy Goes Walnuts / Yakko’s Universe
004. Hooked on a Ceiling / Goodfeathers: The Beginning
005. Taming of the Screwy
VOLUME 1, DISC 2
006. Temporary Insanity / Operation: Lollipop / What Are We?
007. Piano Rag / When Rita Met Runt
008. The Big Candy Store / Bumbie’s Mom
009. Wally Llama / Where Rodents Dare
010. King Yakko
VOLUME 1, DISC 3
011. No Pain, No Painting / Les Miseranimals
012. Garage Sale of the Century / West Side Pigeons
013. Hello Nice Warners / La Behemoth / Little Old Slappy from Pasadena
014. La La Law / Cat on a Hot Steel Beam
015. Space Probed / Battle for the Planet
VOLUME 1, DISC 4
016. Chalkboard Bungle / Hurray for Slappy / The Great Wakkorotti: The Master and His Music
017. Roller Over, Beethoven / The Cat and the Fiddle
018. Pavlov's Mice / Chicken Boo-Ryshnikov / Nothing But the Tooth
019. Meatballs or Consequences / A Moving Experience
020. Hearts of Twilight / The Boids
VOLUME 1, DISC 5
021. The Flame / Wakko’s America / Davy Omelette / Four Score and Seven Migraines Ago
022. Guardin’ the Garden / Plane Pals
023. Be Careful What You Eat / Up the Crazy River / Ta Da Dump, Ta Da Dump, Ta Da Dump Dump Dump
024. Opportunity Knox / Wings Take Heart
025. Hercule Yakko (w/ Hip Hippos, Pinky & the Brain) / Home on De-Nile / A Midsummer Night’s Dream
VOLUME 2, DISC 1
026. Testimonials / Babblin’ Bijou / Potty Emergency / Sir Yaksalot
027. You Risk Your Life / I Got Yer Can / Jockey For Position
028. Moby or Not Moby / Mesozoic Mindy / The Good, the Boo and the Ugly
029. Draculee, Draculaa / Phranken-Runt
030. Hot, Bothered and Bedeviled / Moon Over Minerva / Skullhead Boneyheads
VOLUME 2, DISC 2
031. O Silly Mio / Puttin’ on the Blitz / The Great Wakkorotti: The Summer Concert
032. Chairman of the Bored / Planets Song / Astro-Buttons
033. Cartoons in Wakko’s Body / Noah’s Lark / The Big Kiss / Hiccup
034. Clown and Out / Bubba Bo Bob Brain
035. In The Garden of Mindy (Brain & Mindy) / No Place Like Homeless (Pesto & Runt) / Katie Ka-Boo (Katie Ka-Boom & Chicken Boo) / Baghdad Cafe (Yakko, Wakko & Slappy)
VOLUME 2, DISC 3
036. Critical Condition / The Three Muska-Warners
037. Dough Dough Boys / Boot Camping / General Boo-Regard
038. Spell-Bound
039. Smitten with Kittens / Alas Poor Skullhead / White Gloves
040. Fair Game / The Slapper / Puppet Rulers
VOLUME 2, DISC 4
041. Buttermilk, It Makes a Body Bitter / Broadcast Nuisance / Raging Bird
042. Animator’s Alley / Can’t Buy a Thrill / Hollywoodchuck
043. Of Nice and Men / What a Dump / Survey Ladies
044. Useless Facts / The Senses / The World Can Wait / Kiki’s Kitten
045. Windsor Hassle / …And Justice for Slappy
VOLUME 2, DISC 5
046. Turkey Jerky / Wild Blue Yonder
047. Video Review / When Mice Ruled the Earth
048. Mobster Mash / Lake Titicaca / Icebreakers
049. A Christmas Plotz / Little Drummer Warners
050. Twas The Day Before Christmas (with all major characters) / Jingle Boo / The Great Wakkorotti: The Holiday Concert / Toy Shop Terror / Yakko's Universe
VOLUME 3, DISC 1
051. The Warners and the Beanstalk / Frontier Slappy
052. Ups and Downs / The Brave Little Trailer / Yes, Always
053. Drive-Insane / Girlfeathers / I’m Cute
054. Brain Meets Brawn / Meet Minerva
055. Gold Rush / A Gift of Gold (Mindy & Buttons cameo) / Dot’s Quiet Time
VOLUME 3, DISC 2
056. Schnitzelbank / The Helpinki Formula / Les Boutons Et Le Ballon (Buttons And The Balloon) / Kung Boo
057. Of Course, You Know This Means Warners / Up a Tree / Wakko’s Gizmo
058. Meet John Brain / Smell Ya Later
059. Ragamuffins / Woodstock Slappy
060. Karaoke-Dokie / The Cranial Crusader / The Chicken Who Loved Me
VOLUME 3, DISC 3
061. Baloney & Kids / Super Buttons / Katie Ka-Boom: The Driving Lesson
062. Scare Happy Slappy / Witch One / MacBeth (w/ Slappy & Hello Nurse)
063. With Three You Get Eggroll / Mermaid Mindy / Katie Ka-Boom: Call Waiting
064. Lookit the Fuzzy Heads (w/ Elmyra, appearances by Mindy & Buttons) / No Face Like Home
065. The Warners 65th Anniversary Special
SEASON 2
VOLUME 3, DISC 4
066. Take My Siblings Please / The Mindy 500 / Morning Malaise
067. Miami Mama-Mia / Pigeon on the Roof
068. We're No Pigeons / Whistle-Stop Mindy / Katie Ka-Boom: The Broken Date
069. I’m Mad / Bad Mood Bobby / Katie Ka-Boom: The Blemish / Fake
SEASON 3
070. Super Strong Warner Siblings / Nutcracker Slappy / Wakko's New Gookie / A Quake, A Quake!
VOLUME 3, DISC 5
071. Variety Speak / Three Tenors and You're Out / Bingo
072. Deduces Wild / Rest in Pieces / U.N. Me
073. A Hard Day’s Warner / Gimme a Break / Please Please Please Get a Life Foundation
074. The Tiger Prince / All the Words in the English Language / The Kid In The Lid / Method To Her Madness
075. The Presidents Song / Don’t Tread on Us / The Flame Returns by Henry Wadsworth Longfellow ?
VOLUME 4, DISC 1
076. Gimme the Works / Button in Ows / Hercules Unwound (Yakko, Wakko & Dot, then Pinky & the Brain)
077. This Pun for Hire / Star Truck / Go Fish / Multiplication Song
078. The Sound of Warners / Yabba Dabba Boo
079. My Mother the Squirrel / The Party / Oh! Say Can You See? / The 12 Days of Christmas Song
080. Dot’s Entertainment / The Girl With the Googily Goop / Gunga Dot
081. Soccer Coach Slappy / Belly Button Blues / Our Final Space Cartoon, We Promise / Valuable Lesson
082. Wakko's 2-Note Song / Panama Canal / Hello Nurse / The Ballad of Magellan / The Return of The Great Wakkorotti / The Big Wrap Party Tonight
SEASON 4
083. One Flew Over the Cuckoo Clock
VOLUME 4, DISC 2
084. Cutie and the Beast / Boo Happens / Noel
085. Jokahontas / Boids on the Hood / Mighty Wakko at the Bat
086. A Very Very Very Very Special Show / Night of the Living Buttons / Soda Jerk
087. From Burbank With Love / Anchors A-Warners / When You’re Traveling from Nantucket
088. Papers for Pappa / Amazing Gladiators / Pinky and the Ralph
089. 10 Short Films About Wakko Warner / No Time for Love / The Boo Network
090. Pitter Patter of Little Feet (with Brain) / Mindy in Wonderland / Ralph’s Wedding
SEASON 5
091. Message in a Bottle / Back in Style / Bones in the Body (with Mr. Skullhead)
VOLUME 4, DISC 3
092. It / Dot – The Macadamia Nut (most characters appear) / Bully for Skippy
093. Cute First (Ask Later) / Acquaintances / Here Comes Attila / Boo Wonder
094. Hooray for North Hollywood: Part 1
095. Hooray for North Hollywood: Part 2
096. The Carpool / The Sunshine Squirrels
097. The Christmas Tree / Punchline (Part 1) / Prom Night / Punchline (Part 2)
098. Magic Time / The Brain’s Apprentice
099. Birds on a Wire / The Scoring Session / The Animaniacs Suite
DIRECT-TO-VIDEO MOVIE
M01. Wakko’s Wish